Hi, I’m Aya!
I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.
Check out some of my work below.
Scroll to see more

Key Research Projects
Project 1
Project 2
Project 3
The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance
In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.
To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation.
My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications
Shoshkes-Carmel M. et al., Nature (2018)
Kondo, A. & Kaestner, K. H. Development (2019)

Publications
Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging
Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.
Cholangiocarcinoma
Oncology
Spatial Biology
Discovery and generalization of tissue structures from spatial omics data
Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.
Systems Biology
Spatial Biology
Unsupervised Annotation
Spatial proteomics of human diabetic kidney disease, from health to class III
Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.
Diabetic Kidney Disease
Multiplex Imaging
Spatial Biology
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91
Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.
Psoriasis
Immunology
Multi-omics
Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.
Type I Diabetes
Single Cell Transcriptomics
Multi-omics
Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease
Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.
Inflammatory Bowel Disease
Immunology
Spatial Biology
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.
Kidney Disease
Single Cell Transcriptomics
Multi-omics
FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development
Kondo, A., & Kaestner, K. H.
Intestinal Development
Wnt Signaling
Mouse Genetics
Subepithelial telocytes are an important source of Wnts that supports intestinal crypts
Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.
Intestinal Stem Cells
Stem Cell Niche
Wnt Signaling
Hi, I’m Aya!
I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.
Check out some of my work below.
Scroll to see more

Key Research Projects
#1
#2
#3
The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance
In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.
To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation.
My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications
Shoshkes-Carmel M. et al., Nature (2018)
Kondo, A. & Kaestner, K. H. Development (2019)

Publications
Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging
Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.
Cholangiocarcinoma
Oncology
Spatial Biology
Discovery and generalization of tissue structures from spatial omics data
Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.
Systems Biology
Spatial Biology
Unsupervised Annotation
Spatial proteomics of human diabetic kidney disease, from health to class III
Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.
Diabetic Kidney Disease
Multiplex Imaging
Spatial Biology
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91
Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.
Psoriasis
Immunology
Multi-omics
Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.
Type I Diabetes
Single Cell Transcriptomics
Multi-omics
Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease
Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.
Inflammatory Bowel Disease
Immunology
Spatial Biology
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.
Kidney Disease
Single Cell Transcriptomics
Multi-omics
FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development
Kondo, A., & Kaestner, K. H.
Intestinal Development
Wnt Signaling
Mouse Genetics
Subepithelial telocytes are an important source of Wnts that supports intestinal crypts
Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.
Intestinal Stem Cells
Stem Cell Niche
Wnt Signaling
Hi, I’m Aya!
I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.
Check out some of my work below.
Scroll to see more

Key Research Projects
#1
#2
#3
The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance
In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.
To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation.
My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications
Shoshkes-Carmel M. et al., Nature (2018)
Kondo, A. & Kaestner, K. H. Development (2019)

Publications
Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging
Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.
Cholangiocarcinoma
Oncology
Spatial Biology
Discovery and generalization of tissue structures from spatial omics data
Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.
Systems Biology
Spatial Biology
Unsupervised Annotation
Spatial proteomics of human diabetic kidney disease, from health to class III
Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.
Diabetic Kidney Disease
Multiplex Imaging
Spatial Biology
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91
Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.
Psoriasis
Immunology
Multi-omics
Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.
Type I Diabetes
Single Cell Transcriptomics
Multi-omics
Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease
Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.
Inflammatory Bowel Disease
Immunology
Spatial Biology
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.
Kidney Disease
Single Cell Transcriptomics
Multi-omics
FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development
Kondo, A., & Kaestner, K. H.
Intestinal Development
Wnt Signaling
Mouse Genetics
Subepithelial telocytes are an important source of Wnts that supports intestinal crypts
Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.
Intestinal Stem Cells
Stem Cell Niche
Wnt Signaling