Hi, I’m Aya!

I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.


Check out some of my work below.

Scroll to see more

Key Research Projects

Project 1

Project 2

Project 3

The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance

In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.

To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation. 

My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications

Shoshkes-Carmel M. et al., Nature (2018)

Kondo, A. & Kaestner, K. H. Development (2019)

Publications

Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging

Hepatology Communications

Feb 19 2025

Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.

Cholangiocarcinoma

Oncology

Spatial Biology

Unveiling Spatial Immune Cell Profile in Kidney Allograft Rejections Using 36-plex Immunofluorescence Imaging

Transplantation

Dec 2024

Hirai, T., Kondo, A., Shimizu, T., Fukuda, H., Tokita, D., Takagi, T., Mayer, A. T., & Ishida, H.

Kidney Transplant Rejection

Immunology

Spatial Biology

Discovery and generalization of tissue structures from spatial omics data

Cell Reports Methods

Aug 19 2024

Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.

Systems Biology

Spatial Biology

Unsupervised Annotation

Spatial proteomics of human diabetic kidney disease, from health to class III

Diabetologia

Jul 22 2024

Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.

Diabetic Kidney Disease

Multiplex Imaging

Spatial Biology

A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91

Science Immunology

Jan 26 2024

Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.

Psoriasis

Immunology

Multi-omics

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

Nature Metabolism

Feb 28 2022

Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.

Type I Diabetes

Single Cell Transcriptomics

Multi-omics

Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease

Gastroenterology

Dec 2021

Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.

Inflammatory Bowel Disease

Immunology

Spatial Biology

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Nature Communications

Apr 15 2021

Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.

Kidney Disease

Single Cell Transcriptomics

Multi-omics

FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development

Cells & Development

Feb 8 2021

Kondo, A., & Kaestner, K. H.

Intestinal Development

Wnt Signaling

Mouse Genetics

Emerging diverse roles of telocytes

Development

Jul 16 2019

Kondo, A., Kaestner, K. H.

Stem Cell Niche

Mesenchymal Cells

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts

Nature

May 2 2018

Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.

Intestinal Stem Cells

Stem Cell Niche

Wnt Signaling

Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease

Science

Apr 5 2018

Park, J., Shrestha, R., Qiu, C., Kondo, A., Huang, S., Werth, M., Li, M., Barasch, J., & Suszták, K.

Kidney Disease

Single Cell Transcriptomics

Mouse Genetics

Hi, I’m Aya!

I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.


Check out some of my work below.

Scroll to see more

Key Research Projects

#1

#2

#3

The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance

In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.

To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation. 

My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications

Shoshkes-Carmel M. et al., Nature (2018)

Kondo, A. & Kaestner, K. H. Development (2019)

Publications

Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging

Hepatology Communications

Feb 19 2025

Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.

Cholangiocarcinoma

Oncology

Spatial Biology

Unveiling Spatial Immune Cell Profile in Kidney Allograft Rejections Using 36-plex Immunofluorescence Imaging

Transplantation

Dec 2024

Hirai, T., Kondo, A., Shimizu, T., Fukuda, H., Tokita, D., Takagi, T., Mayer, A. T., & Ishida, H.

Kidney Transplant Rejection

Immunology

Spatial Biology

Discovery and generalization of tissue structures from spatial omics data

Cell Reports Methods

Aug 19 2024

Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.

Systems Biology

Spatial Biology

Unsupervised Annotation

Spatial proteomics of human diabetic kidney disease, from health to class III

Diabetologia

Jul 22 2024

Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.

Diabetic Kidney Disease

Multiplex Imaging

Spatial Biology

A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91

Science Immunology

Jan 26 2024

Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.

Psoriasis

Immunology

Multi-omics

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

Nature Metabolism

Feb 28 2022

Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.

Type I Diabetes

Single Cell Transcriptomics

Multi-omics

Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease

Gastroenterology

Dec 2021

Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.

Inflammatory Bowel Disease

Immunology

Spatial Biology

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Nature Communications

Apr 15 2021

Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.

Kidney Disease

Single Cell Transcriptomics

Multi-omics

FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development

Cells & Development

Feb 8 2021

Kondo, A., & Kaestner, K. H.

Intestinal Development

Wnt Signaling

Mouse Genetics

Emerging diverse roles of telocytes

Development

Jul 16 2019

Kondo, A., Kaestner, K. H.

Stem Cell Niche

Mesenchymal Cells

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts

Nature

May 2 2018

Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.

Intestinal Stem Cells

Stem Cell Niche

Wnt Signaling

Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease

Science

Apr 5 2018

Park, J., Shrestha, R., Qiu, C., Kondo, A., Huang, S., Werth, M., Li, M., Barasch, J., & Suszták, K.

Kidney Disease

Single Cell Transcriptomics

Mouse Genetics

Hi, I’m Aya!

I am a scientist turned product manager passionate about bridging the gap between data and innovative technologies to enable users to discover new biological insights.


Check out some of my work below.

Scroll to see more

Key Research Projects

#1

#2

#3

The Role of FoxL1+ Telocytes in Intestinal Stem Cell Maintenance

In this research, I explored the role of FOXL1+ telocytes in the maintenance of intestinal stem cells (ISCs). These telocytes were identified as a critical source of both Wnt activators and inhibitors, localized strategically along the crypt-villus axis to regulate the Wnt signaling environment within the intestinal stem cell niche.

To investigate this, our group generated a mouse model for conditional ablation of Porcupine (a protein necessary for Wnt ligand maturation) specifically in FOXL1+ cells using a tamoxifen-inducible Cre-lox system. Using this model, we demonstrated that Wnt secretion from FoxL1+ cells is indispensable for epithelial renewal, as its loss caused decreased nuclear β-catenin, a marker of active Wnt signaling, as well as decreased ISC markers and impaired epithelial proliferation. 

My role in this project was to perform immunohistochemical (IHC) staining and conduct quantitative analyses of single-molecule fluorescence in situ hybridization (smFISH) experiments. IHC was utilized to localize proteins such as β-catenin and cyclin D1, while smFISH was used to spatially and quantitatively map the expression of key Wnt signaling molecules such as Wnt2b and Rspo3. These efforts contributed to the crucial evidence of the spatial compartmentalization of Wnt ligands and the signaling disruptions caused by Porcupine ablation in FoxL1+ cells. This work underscores the importance of FOXL1+ telocytes in maintaining the intestinal stem cell niche and epithelial homeostasis.

Related Publications

Shoshkes-Carmel M. et al., Nature (2018)

Kondo, A. & Kaestner, K. H. Development (2019)

Publications

Deep Immune Profiling of Intrahepatic Cholangiocarcinoma with CODEX Multiplexed Imaging

Hepatology Communications

Feb 19 2025

Baretti, M., Shekhar, S., Sahai, V., Shu, D., Howe, K., Gunchick, V., Assarzadegan, N., Kartalia, E., Zhu, Q., Hallab, E., Sheth-Shah, A., Kondo, A., Azad, N.S., Yarchoan, M.

Cholangiocarcinoma

Oncology

Spatial Biology

Unveiling Spatial Immune Cell Profile in Kidney Allograft Rejections Using 36-plex Immunofluorescence Imaging

Transplantation

Dec 2024

Hirai, T., Kondo, A., Shimizu, T., Fukuda, H., Tokita, D., Takagi, T., Mayer, A. T., & Ishida, H.

Kidney Transplant Rejection

Immunology

Spatial Biology

Discovery and generalization of tissue structures from spatial omics data

Cell Reports Methods

Aug 19 2024

Wu, Z., Kondo, A., McGrady, M., Baker, E. A. G., Chidester, B., Wu, E., Rahim, M. K., Bracey, N. A., Charu, V., Cho, R. J., Cheng, J. B., Afkarian, M., Zou, J., Mayer, A. T., & Trevino, A. E.

Systems Biology

Spatial Biology

Unsupervised Annotation

Spatial proteomics of human diabetic kidney disease, from health to class III

Diabetologia

Jul 22 2024

Kondo, A., McGrady, M., Nallapothula, D., Ali, H., Trevino, A. E., Lam, A., Preska, R., D'Angio, H. B., Wu, Z., Lopez, L. N., Badhesha, H. K., Vargas, C. R., Ramesh, A., Wiegley, N., Han, S. S., Dall'Era, M., Jen, K. Y., Mayer, A. T., & Afkarian, M.

Diabetic Kidney Disease

Multiplex Imaging

Spatial Biology

A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical responseue 91

Science Immunology

Jan 26 2024

Wu, D., Hailer, A. A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Rahim, M., Kondo, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Klufas, D., Kim, E., Shain, A. H., Choi, J., Bhutani, T., Simpson, G., Grekin, R. C., … Cho, R. J.

Psoriasis

Immunology

Multi-omics

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

Nature Metabolism

Feb 28 2022

Fasolino, M., Schwartz, G. W., Patil, A. R., Mongia, A., Golson, M. L., Wang, Y. J., Morgan, A., Liu, C., Schug, J., Liu, J., Wu, M., Traum, D., Kondo, A., May, C. L., Goldman, N., Wang, W., Feldman, M., Moore, J. H., Japp, A. S., … Vahedi, G.

Type I Diabetes

Single Cell Transcriptomics

Multi-omics

Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease

Gastroenterology

Dec 2021

Kondo, A., Ma, S., Lee, M. Y. Y., Ortiz, V., Traum, D., Schug, J., Wilkins, B., Terry, N. A., Lee, H., & Kaestner, K. H.

Inflammatory Bowel Disease

Immunology

Spatial Biology

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Nature Communications

Apr 15 2021

Miao, Z., Balzer, M. S., Ma, Z., Liu, H., Wu, J., Shrestha, R., Aranyi, T., Kwan, A., Kondo, A., Pontoglio, M., Kim, J., Li, M., Kaestner, K. H., & Susztak, K.

Kidney Disease

Single Cell Transcriptomics

Multi-omics

FoxL1+ mesenchymal cells are a critical source of Wnt5a for midgut elongation during mouse embryonic intestinal development

Cells & Development

Feb 8 2021

Kondo, A., & Kaestner, K. H.

Intestinal Development

Wnt Signaling

Mouse Genetics

Emerging diverse roles of telocytes

Development

Jul 16 2019

Kondo, A., Kaestner, K. H.

Stem Cell Niche

Mesenchymal Cells

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts

Nature

May 2 2018

Shoshkes-Carmel, M., Wang, Y. J., Wangensteen, K. J., Tóth, B., Kondo, A., Massasa, E. E., Itzkovitz, S., & Kaestner, K. H.

Intestinal Stem Cells

Stem Cell Niche

Wnt Signaling

Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease

Science

Apr 5 2018

Park, J., Shrestha, R., Qiu, C., Kondo, A., Huang, S., Werth, M., Li, M., Barasch, J., & Suszták, K.

Kidney Disease

Single Cell Transcriptomics

Mouse Genetics